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Introduction to coloRify22 days ago
Introduction | Why use coloRify? | How coloRify works | Examples | colorify() | basic | seed | custom colors | naming | ordering | transparency | custom palettes | gradients | plotting | values and factors | minimum and maximum values | locking | mapping | display_palettes() | all palettes | n palettes | palettes by index | popular palettes | bordered palettes | ggplot2 bindings | scale_color_colorify() | non-discrete | discrete | scale_fill_colorify() | colortistry() | Information | Contact | License | Issues and contributions | FAQ | Session info
goatea GUI vignette2 months ago
Introduction | Why use goatea? | How goatea works | Running GOATEA: Shiny application - Graphical User Interface (GUI) | Web browser - HuggingFace Docker container | Local: via R(studio) or Docker | Installation | Running goatea Shiny GUI: via R(studio) | Running goatea Shiny GUI: via Docker | GOATEA GUI demonstration | Initialization - load data | Pre-enrichment visualization - Volcano plot | Pre-enrichment visualization - Overlap (UpSet) plot | Enrichment with GOAT | Post-enrichment visualization: split-dot plot | Post-enrichment visualization: termtree plot | Post-enrichment visualization: gene & genesets heatmap | Post-enrichment visualization: gene & effectsize heatmap | Post-enrichment visualization: protein-protein interaction graph | Information | Contact | License | Issues and contributions | GOAT reference | Session info
goatea vignette2 months ago
Introduction | Why use goatea? | How goatea works | Installation | Running GOATEA: Shiny application | Running goatea: automated analyses | Initialization | Loading genelists | Loading genesets | GOAT Enrichment Analysis | Genes overview table | Enrichment searching and filtering | Gene selection | Plotting | pre-enrichment: Volcano plot | pre-enrichment: UpSet overlap plot | Post-enrichment: termtree plot | Post-enrichment: split-dot plot | Post-enrichment: gene-effectsize heatmap | Post-enrichment: gene-genesets heatmap | Post-enrichment: protein-protein interaction network graph | Information | Contact | License | Issues and contributions | GOAT reference | Session info